GEM2 Atlas

Genome-scale metabolic models across species, isolation sources, geography, and genome quality.

Static atlas built from 26,424 genome records in Sheet2.

Genomes Species and source metadata

Quality control CheckM2 completeness and contamination

Metabolic models Genome-scale reconstruction layer

Pairwise interactions Ready for the next matrix layer

Source composition

filtered records

Continent distribution

filtered records

Genome quality

CheckM2

SGB representative phylogeny

dRep representatives summarized as a genome-quality, phylum, source, and geography annotated tree.

SGB3000 phylogeny preview — Preview image copied from the SGB3000 multitrack tree figure.

Representative source groups

Representative phyla

Pairwise interaction atlas

Static summaries from the full environment-stratified interaction table.

Interaction environments

Top interaction pairs

static highlights

Model A	Model B	Environment	Competition	Cooperation

Genome browser

Search by species, genome ID, sample, source, country, or taxonomy lineage.

Species	Source	Country	Completeness	Contamination	N50	Genome size

Data layers

This atlas view is generated from species metadata, SGB summaries, and compact interaction JSON derived from the full pairwise table. Memote scores can be added as a linked layer later.

Active now Species, source, geography, taxonomy, genome quality, SGB summary, and interaction summaries

Next layer Genome-to-SGB mapping, memote scores, and API-backed arbitrary pair lookup